Vicente Parot

Journal Publications

• S.-Y. Lee,V. J. Parot, B. E. Bouma, and M. Villiger, “Reciprocity-induced symmetry in the round-trip transmis-sion through complex systems”, APL Photonics, vol. 5, p. 106104, (2020). pdf, publisher's link
• L. Z. Fan, S. Kheifets, U. L. Bohm, H. Wu, K. D. Piatkevich, M. E. Xie, V. Parot, Y. Ha, K. E. Evans, E. S.Boyden, A. E. Takesian, and A. E. Cohen, “All-Optical Electrophysiology Reveals the Role of Lateral Inhibitionin Sensory Processing in Cortical Layer 1”, Cell 180, 1–15 (2020). pdf, publisher's link
• Adam, Y., Kim, J.J., Lou, S., Zhao, Y., Xie, M.E., Brinks, D., Wu, H., Mostajo-Radji, M.A., Kheifets, S., Parot, V.J., Chettih, S., Williams, K.J., Gmeiner, B., Farhi, S.L., Madisen, L., Buchanan, E.K., Kinsella, I., Zhou, D. Paninski, L., Harvey, C.D., Zeng, H., Arlotta, P., Campbell, R.E. and Cohen, A.E., “All-optical electrophysiology reveals brain-state dependent changes in hippocampal subthreshold dynamics and excitability”, Nature 569, 413-417 (2019). preprint pdf, publisher's link, Harvard Chemistry news
• Parot V.J.*, Sing-Long C.*, Adam Y., Böhm U.L., Fan L.Z., Farhi S.L. and Cohen A.E., “Compressed Hadamard Microscopy for high-speed optically sectioned neuronal activity recordings”, Journal of Physics D: Applied Physics 52 144001, Special issue on neurophotonics (2019). pdf, publisher's link
• Farhi, S.L.*, Parot, V.J.*, Grama, A., Yamagata, M., Abdelfattah, A.S., Adam, Y., Lou, S., Kim, J.J., Campbell, R.E., Cox, D.D. and Cohen, A.E., “Wide-area all-optical neurophysiology in acute brain slices”, Journal of Neuroscience, 0168-19 (2019). pdf, publisher's link
• S. Lou, Y. Adam, E.N. Weinstein, E. Williams, K. Williams, V. Parot, N. Kavokine, S. Liberles, L. Madisen, H. Zeng, and A.E. Cohen, “Genetically targeted all-optical electrophysiology with a transgenic Cre-dependent Optopatch mouse”, Journal of Neuroscience, 36(43), pp.11059-11073 (2016). main pdf, supplement pdf, publisher's link
• E. Lage, V. Parot, S. C. Moore, A. Sitek, J. M. Udías, S. R. Dave, M. Park, J. J. Vaquero and J. L. Herraiz, “Recovery and normalization of triple coincidences in PET”, Med. Phys. 42, 1398 (2015). pdf, publisher's link
• J. Cal-Gonzalez, E. Lage, E. Herranz, E. Vicente, J. Udias, S. Moore, M. Park, S. Dave, V. Parot and J. L. Herraiz, “Simulation of triple coincidences in PET”, Phys. Med. Biol. 60, 117 (2014). pdf, publisher's link
• N. J. Durr, G. Gonzalez and V. Parot, “Three dimensional imaging techniques for improved colonoscopy”, Expert Review of Medical Devices, 11(2):105-107 (2014). pdf, publisher's link
• V. Parot, D. Lim, G González, G. Traverso, N. S. Nishioka, B. J. Vakoc and N. J. Durr, “Photometric stereo endoscopy”, Journal of Biomedical Optics, 18(7):076017-076017 (2013). pdf, publisher's link, MIT news
• V. Parot, C. Sing-Long, C. Lizama, C. Tejos, S. Uribe and P. Irarrazaval, “Application of the fractional fourier transform to image reconstruction in MRI”, Magnetic Resonance in Medicine, 68:17–29 (2012). pdf, publisher's link
• C. Arrieta, S. Uribe, J. Ramos-Grez, A. Vargas, P. Irarrazaval, V. Parot and C. Tejos, “Quantitative assessments of geometric errors for rapid prototyping in medical applications”, Rapid Prototyping Journal, 18/6 (2012) 431–442. pdf, publisher's link
• J. L. Honorato, V. Parot, C. Tejos, S. Uribe and P. Irarrazaval, “Chemical species separation with simultaneous estimation of field map and T2* image using a k-space formulation”, Magnetic Resonance in Medicine, 68:400–408 (2012). pdf, publisher's link
• P. Irarrazaval, C. Lizama, V. Parot, C. Sing-Long, C. Tejos, “The fractional Fourier transform and quadratic field magnetic resonance imaging”, Computers & Mathematics with Applications, vol. 62, no. 3, Aug 2011, 1576-1590. pdf, publisher's link
• V. I. Fernandez, P. Kosuri, V. Parot, J. M. Fernandez, “Extended Kalman filter estimates the contour length of a protein in single molecule atomic force microscopy experiments”, Review of Scientific Instruments, 80, 113104 (2009). pdf, publisher's link

Theses

• Vicente J. Parot, "All-optical neurophysiology using high-speed wide-area optical sectioning", PhD, Harvard University, May 2019. pdf
• Vicente J. Parot, "Application of the fractional Fourier transform to image reconstruction in MRI", MS, Pontifical Catholic University of Chile, Dec 2009. pdf

Conference Presentations

• J. L. Herraiz, F. Mulero, V. Parot, S. Dave, S. Moore, J. M. Udias, J. J. Vaquero, E. Lage. “mPET: Herramienta innovadora para imagen PET multitrazador” Rev Esp Med Nucl Imagen Mol. 2014;33(S1):119. pdf
• J. L. Herraiz, S. C. Moore, V. Parot, S.R. Dave, M. Park, S. Yoo, W. Lee, H. Kim and E. Lage. “A prompt-gamma correction method for non-standard PET radionuclides based on the detection of triple coincidences” IEEE NSS-MIC 2014, Seattle, WA. pdf
• N. J. Durr, V. Parot, G. Traverso, W. P. Puricelli, B. J. Vakoc, N. S. Nishioka, and G. Gonzalez. “Imaging colonic surface topography with photometric stereo endoscopy.” Gastrointestinal Endoscopy, 79:AB352, 2014. pdf
• G. Gonzalez, V. Parot, W. Lo, B. J. Vakoc, and N. J. Durr. “Feature space optimization for virtual chromoendoscopy augmented by topography”, MICCAI 2014, 8673:642-649, Boston, MA. pdf
• N. J. Durr, G. Gonzalez, D. Lim, G. Traverso, N. S. Nishioka, B. J. Vakoc, V. Parot, “System for clinical photometric stereo endoscopy”, Photonics West: Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XII 2014;8935-51, San Francisco, CA, USA. abstract, proceedings
• V. Parot, J. L. Herraiz, S. R. Dave, J. M. Udias, S. C. Moore, M. Park, J. J. Vaquero and E. Lage, “A New Approach for Multiplexed PET Imaging”, IEEE MIC 2013 #M03-5, Seoul, Korea. pdf
• E. Lage, V. Parot, J. M. Udias, S. C. Moore, M. Park, J. J. Vaquero, A. Sitek, S. R. Dave and J. L. Herraiz, “Recovery of multi-interaction photon events to improve the performance of PET scanners”, IEEE MIC 2013 #M18-44, Seoul, Korea. pdf
• J. Cal-Gonzalez, E. Herranz, J. M. Udias, S. R. Dave, V. Parot, E. Lage and J. L. Herraiz, “Simulation of Triple Coincidences in PET”, IEEE MIC 2013 #M13-2, Seoul, Korea. pdf
• J. L. Herraiz, E. Lage, V. Parot, S. R. Dave, J. M. Udias, J. J. Vaquero, A. Muñoz and L. M. Fraile, “Production of positron-gamma emitters for multiplexed PET (mPET) imaging”, IEEE MIC 2013 #M16-26, Seoul, Korea. pdf
• J. L. Honorato, V. Parot, C. Tejos, S. Uribe, P. Irarrazaval, “Chemical species separation with simultaneous estimation of field map & T2* using a k-space formulation”, ISMRM 2012 proceedings #220, Melbourne, Australia. pdf
• C. Arrieta, S. Uribe, V. Parot, P. Irarrazaval, C. Sing-Long, C. Tejos, “Cardiac Image Segmentation Using Level Sets with Preserved Topology”, ISMRM 2011 proceedings #1188, Montreal, Canada. pdf
• J. P. Stockmann, G. Galiana, V. Parot, L. Tam, R. T. Constable, “Scalable Anti-Aliasing Image Reconstruction in the Presence of a Quadratic phase-Scrambling Gradient Using the Fractional Fourier Transform”, ISMRM 2011 proceedings #2867, Montreal, Canada. pdf
• J. P. Stockmann, G. Galiana, V. Parot, L. Tam, R. T. Constable, “The Variable-Order Fractional Fourier Transform: A New Tool for Efficient Reconstruction of Images Encoded by Linear and Quadratic Gradients with Reduced Sensitivity to Calibration Errors”, ISMRM 2011 proceedings #744, Montreal, Canada. pdf
• C. Sing-Long, V. Parot, C. Lizama, S. Uribe, C. Tejos, P. Irarrazaval “Analysis of Quadratic Field Distortions Using the Fractional Fourier Transform”, ISMRM 2010 proceedings #143, Stockholm, Sweden. pdf
• V. Parot, C. Sing-Long, C. Lizama, S. Uribe, C. Tejos, P. Irarrazaval “Reconstruction Method for Non-Homogeneous Magnetic Fields Using the Fractional Fourier Transform”, ISMRM 2010 proceedings #2939, Stockholm, Sweden. pdf
• V. I. Fernandez, P. Kosuri, V. Parot, J. M. Fernandez, “Kalman Filter Estimates of the Contour Length of an Unfolding Protein in Single-Molecule Force Spectroscopy Experiments”, Biophysical Journal, vol. 96, no. 3, s1, p. 36a, x, Feb 2009. pdf

Intellectual Property

• List in Google Patents.