Optimization of Carbon Metabolism, download page



Supplementary materials

Check Giovanni Stracquadanio's homepage for supplementary materials
http://www.dmi.unict.it/~stracquadanio/photosynthesis.html

Source codes

Pareto Maximal Photosynthetic Productivity

Algorithm Original source code Runnable source package coupled with Carbon-Metabolism
NSGA-II nsga2-gnuplot-v1.1.tar Requires: MATLAB, and the following c++ libraries {m, mat, ut, mx, hdf5, icudata, icuuc, icui18n, icuio, mwfl, boost_thread-gcc41-mt-1_34_1, boost_signals-gcc41-mt-1_34_1, stdc++} that can be linked as follows

# export PROJECT_PATH=/your/path/to/the/project/folder
# export MATLAB_PATH=/your/path/to/matlab/installation/folder
# export MATLAB_BIN_PATH=$MATLAB_PATH/bin
# ln -s $MATLAB_BIN_PATH/glnx86/libboost_signals-gcc41-mt-1_34_1.so.1.34.1 $PROJECT_PATH/libboost_signals-gcc41-mt-1_34_1.so
# ln -s $MATLAB_BIN_PATH/glnx86/libboost_thread-gcc41-mt-1_34_1.so.1.34.1 $PROJECT_PATH/libboost_thread-gcc41-mt-1_34_1.so
# ln -s $MATLAB_BIN_PATH/glnx86/libhdf5.so.0 $PROJECT_PATH/libhdf5.so
# ln -s $MATLAB_BIN_PATH/glnx86/libicudata.so.36 $PROJECT_PATH/libicudata.so
# ln -s $MATLAB_BIN_PATH/glnx86/libicui18n.so.36 $PROJECT_PATH/libicui18n.so
# ln -s $MATLAB_BIN_PATH/glnx86/libicuio.so.36 $PROJECT_PATH/libicuio.so
# ln -s $MATLAB_BIN_PATH/glnx86/libicuuc.so.36 $PROJECT_PATH/libicuuc.so
# ln -s $MATLAB_BIN_PATH/glnx86/libmat.so $PROJECT_PATH/libmat.so
# ln -s $MATLAB_BIN_PATH/glnx86/libmwfl.so $PROJECT_PATH/libmwfl.so
# ln -s $MATLAB_BIN_PATH/glnx86/libmx.so $PROJECT_PATH/libmx.so
# ln -s $MATLAB_PATH/toolbox/symbolic/mupad/linux/lib/gcclibs/libstdc++.so.6 $PROJECT_PATH/libstdc++.so
# ln -s $MATLAB_BIN_PATH/glnx86/libut.so $PROJECT_PATH/libut.so
# export LD_LIBRARY_PATH=$MATLAB_BIN_PATH/glnx86:$OPTIONAL_LIBS:$MATLAB_PATH/sys/os/glnx86

Compile: make

Run: ./RunMultiObjectivePhotosyntheticOpt.sh

Stop: ./StopMultiObjectivePhotosyntheticOpt.sh

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Last change by: Renato Umeton
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