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- AC3D
- Accelrys: Materials Studio, Cerius2, Insight II, Catalyst, and QUANTA
- Avatar Software: MolScript
- Cambridge Soft: ChemOffice, ChemDraw, Chem3D, ChemFinder
- CCP4
- DINO
- Eigenvector
- GAMESS
- GRASP
- HKL Research Inc.: Denzo, XDisplayF and Scalepack
- Hypercube
- Infometrix
- The Math Works: Matlab
- National Instruments: Lab View
- Schrodinger: CAChe, ChemFrontier, FirstDiscovery, Glide, Jaguar, Liaison, MacroModel, Maestro, MaterialsExplorer, Mopac 2002, QikProp, Qsite, Titan
- SHELX
- SPSS Science
- SSI Scientific Software
- Statistica
- RasMol
- Wavemetrics: IGOR Pro
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