Overview
Olfaction in mice - how each olfactory neuron expresses one of
a thousand possible receptor genes. Exploring parallels between
the regulation odorant receptor genes and genes in the immune
system including immunoglobulin genes and interleukin genes.
Olfaction in Drosophila - using Drosophila odorant receptor
genes and the DSCAM gene to analyze the specific connections
of olfactory
neurons in order to unravel the logic of olfactory information
coding.
Research Summary
Gene regulation. It is generally thought that the
regulation of gene expression in diploid eukaryotic organisms allows
comparable expression
levels for the paternally and maternally derived copy of each gene
in each expressing cell. However, exceptions to this expectation
are of great biological significance. Inactivation of X chromosome
genes in females and imprinting of autosomal genes are two instances
in which a distinction between the paternal and maternal copies of
a gene has important functional consequences for the organism. The
epigenetic mechanisms which underlie these phenomena are of great
interest. Our work has been central in identifying and characterizing
a class of autosomal genes with properties similar to the genes subject
to random X-inactivation. This class includes odorant receptor genes
and also the genes encoding immunoglobulins, T cell receptors (TCRs),
interleukins, natural killer cell receptors and pheromone receptors.
This class of autosomal genes shares the property with X inactivated
genes that the monoallelic expression is random; each cell expresses
either the paternal or maternal copy of each gene.
We asked whether
epigenetic control of genes in this class on the same chromosome
was exerted coordinately or whether each such gene
was epigenetically regulated independently of other genes in this
class on the chromosome. Using fluorescence in situ hybridization
(FISH) to assess asynchronous replication, a marker for allele-specific
epigenetic differences, we found that epigenetic regulation was
coordinated on each chromosome: i.e. paternally derived alleles
were regulated
in the same way on the same chromosome. However, within a given
cell clone, chromosomes were regulated independently, so that maternally
derived genes were activated on some chromosomes in a specific
clone
while paternally derived genes were activated on other chromosomes.
These findings support a chromosome wide mechanism for choosing
alleles of autosomal genes which are monoallelically expressed
on a given
chromosome. Excluded is a mechanism by which all monoallelically
expressed genes in a single cell clone of one parental origin or
the other are regulated in a coordinated manner. Initial observations
were on mice, and recent experiments have extended the observations
to humans and also shown that when three copies of a given autosome
are present, still only one is early replicating. Thus, a process
with similarities to X-inactivation appears to be occurring for
all autosomal pairs. We are currently exploring the mechanistic
basis
for the distinction between the maternal and paternal copies of
each autosome.
We are pursuing experiments to further define mechanisms
controlling odorant receptor gene expression using transgenic
mice and retroviral
vectors to manipulate and analyze gene expression in olfactory
neurons.
The Drosophila olfactory system. We
and others have identified a family of novel seven transmembrane
domain receptors that
are likely
Drosophila olfactory receptors. As in the vertebrate
olfactory systems studied, members of the Drosophila olfactory
receptor family are
expressed in distinct subsets of olfactory neurons distributed
amongst neurons expressing different receptors. Using transgenic
approaches,
we find that the neurons expressing a given receptor, while
they are distributed amongst neurons expressing other receptors,
project
to distinct glomeruli in the antennal lobe (the Drosophila equivalent
to the mouse olfactory bulb.)
Thus, like the mouse, the fly
uses
spatial segregation of the projections to the brain to encode
the nature of the olfactory stimulus. We are pursuing experiments
to
further define the specific connections of neurons in the Drosophila olfactory
system and will explore the mechanisms by which these neurons
form appropriate connections and function to accomplish
the discrimination
of odorants. One intriguing gene we are studying is the DSCAM
gene which has been shown to have over 36,000 different possible
splice
forms. We are using a combination of microarray analysis
and single cell RT-PCR to look at the regulation of splicing
of
DSCAM in olfactory
neurons and other neuronal and non-neuronal cells. immunoglobulin
gene allelic exclusion. Allelic exclusion in light-chain
synthesis is thought to result from a feedback
mechanism
by which
the expression of a functional light-chain on the surface
of
the B cell leads to an intracellular signal that downregulates
the V(D)J
recombinase, thus precluding rearrangement of the other allele.
While such a feedback mechanism clearly plays a role in the
maintenance of allelic exclusion, we have shown that the
initial establishment
of allelic exclusion involves differential availability of
the two
alleles for rearrangement. We have shown that asynchronous
replication plays a role in determining which allele will
be rearranged first
in a given developing B cell. Allelic exclusion is critical
for the proper functioning of the immune system including
the prevention
of autoimmunity.
Selected Publications
Singh, N., Ebrahimi, F.A.W., Qi, P. and Chess, A. Coordination
of the Random Asynchronous Replication of Autosomal Loci. Nature
Genetics. 33(3):339-341. (2003).
Singh, N., Bergman, Y., Cedar,
H. and Chess, A. Biallelic germline transcription at the immunoglobulin
locus. Journal of Experimental
Medicine. 197(6): 743-750. (2003).
Mostoslavsky, R*., Singh,
N*., Tenzen, T., Goldmit, M., Gabay, C., Elizur, S., Qi, P.,
Chess, A., Cedar, H., and Bergman, Y.
Asynchronous replication and allelic exclusion in the immune
system. Nature.
414:221-225. (2001). (*These authors contributed equally.)
Gao,
Q., Yuan, B., and Chess, A. Convergent projections of Drosophila olfactory neurons to specific glomeruli suggest
an odotopic map
in the antennal lobe. Nature Neurosci. 3(8): 780-785, (2000).
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